Cell Ranger7.1, printed on 11/05/2024
Cell Ranger provides a set of analysis pipelines that process Chromium Single Cell Gene Expression data to align reads, generate Feature Barcode matrices, perform clustering and other secondary analysis, and more.
Documentation by library type | Cell Ranger pipeline |
---|---|
3' Gene Expression | count |
3' Targeted Gene Expression | count |
3' Gene Expression + Antibody/CRISPR Guide Capture | count |
Antibody Capture only | count |
3' Gene Expression + Cell Multiplexing (+ Antibody/CRISPR Guide Capture) | multi |
Fixed RNA Profiling Gene Expression (+ Antibody Capture) | multi |