Cell Ranger7.1, printed on 11/05/2024
There are four primary ways to run Cell Ranger:
Cloud Analysis | Cluster Mode | Job Submission Mode | Single Server | |
---|---|---|---|---|
Recommended for | Default option for users in supported countries | Organizations using an HPC with SGE or LSF for job scheduling | Organizations using an HPC | Users without access to an HPC, if Cloud Analysis is not an option |
Compute details | Splits each analysis across multiple compute nodes to decrease run time | Splits each analysis across multiple compute nodes to decrease run time | Runs each analysis on a single compute node | Runs each analysis directly on a dedicated server |
Requirements | Any laptop or desktop computer | HPC with SGE or LSF for job scheduling | HPC with most job schedulers | Linux computer with minimum 8 cores & 64 GB RAM |
Cell Ranger computing options for 5' Single Cell V(D)J Immune Profiling are identical to the computing options for 3' Single Cell Gene Expression. While the page below is hosted on the 3' Single Cell solution's section, it is equally applicable to the 5' Immune Profiling solution: